Package org.jmol.shapesurface
Class LcaoCartoon
java.lang.Object
org.jmol.shape.Shape
org.jmol.shape.MeshCollection
org.jmol.shapesurface.Isosurface
org.jmol.shapesurface.LcaoCartoon
- All Implemented Interfaces:
MeshDataServer
,VertexDataServer
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Field Summary
FieldsModifier and TypeFieldDescriptionprivate Object
private String
(package private) boolean
private boolean
(package private) boolean
private Integer
private Integer
private String
private boolean
private Float
private boolean
private float
private int
private javajs.util.V3
private Object
private javajs.util.BS
private String
Fields inherited from class org.jmol.shapesurface.Isosurface
allowMesh, iHaveBitSets, isomeshes, keyXy, sg, thisMesh
Fields inherited from class org.jmol.shape.MeshCollection
bsDisplay, colix, color, connections, currentMesh, displayWithinDistance2, displayWithinPoints, explicitID, htObjects, isDisplayWithinNot, isFixed, jvxlData, linkedMesh, meshCount, meshes, modelIndex, nUnnamed, pickedMesh, pickedModel, pickedPt, pickedVertex, PREVIOUS_MESH_ID, previousMeshID, title
Fields inherited from class org.jmol.shape.Shape
bsColixSet, bsSizeSet, isBioShape, ms, myType, RADIUS_MAX, shapeID, translucentAllowed, translucentLevel, vf, vwr
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Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionprivate void
private void
createLcaoCartoon
(int iAtom) private void
private void
deleteLcaoCartoon
(int iAtom) private String
void
void
merge
(MeshCollection shape) called by ParallelProcessor at completionprivate void
setLcaoOn
(boolean TF) private void
setLcaoOn
(int iAtom, boolean TF) void
setProperty
(String propertyName, Object value, javajs.util.BS bs) Methods inherited from class org.jmol.shapesurface.Isosurface
addMeshInfo, addRequiredFile, addTriangleCheck, addVertexCopy, allocMesh, calculateGeodesicSurface, checkObjectClicked, checkObjectHovered, clearSg, discardTempData, fillMeshData, getCapSlabInfo, getCmd, getPlane, getPolygonColorData, getProperty, getPropertyData, getPropI, getShapeDetail, getSurfacePointIndexAndFraction, getValue, getValues, getVertices, invalidateTriangles, newSg, notifySurfaceGenerationCompleted, notifySurfaceMappingCompleted, setOutputChannel, setPropI, setRequiredFile, setScriptInfo, slabPolygons
Methods inherited from class org.jmol.shape.MeshCollection
checkExplicit, clean, deleteMeshI, deleteMeshKey, getIndexFromName, getMesh, getMeshList, getPickedPoint, getPropDataMC, getPropMC, resetObjects, setModelVisibilityFlags, setPropMC, setStatusPicked, setTitle, setTokenProperty
Methods inherited from class org.jmol.shape.Shape
appendCmd, checkBoundsMinMax, checkObjectDragged, coordinateInRange, encodeColor, findNearestAtomIndex, getColix, getColixA, getColixB, getColixI, getColorCommand, getColorCommandUnk, getFontCommand, getPropShape, getSize, getSizeG, getTranslucentLabel, initializeShape, initModelSet, replaceGroup, setAtomClickability, setModelSet, setPropS, setShapeSizeRD, setSize, setSizeRD, wasClicked
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Field Details
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thisType
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myColorPt
private int myColorPt -
lcaoID
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thisSet
private javajs.util.BS thisSet -
isMolecular
private boolean isMolecular -
rotationAxis
private javajs.util.V3 rotationAxis -
lcaoScale
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lcaoTranslucent
private boolean lcaoTranslucent -
lcaoTranslucentLevel
private float lcaoTranslucentLevel -
lcaoColorPos
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lcaoColorNeg
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lcaoReverseColor
private boolean lcaoReverseColor -
isLonePair
boolean isLonePair -
isRadical
boolean isRadical -
cappingObject
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slabbingObject
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fullCommand
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Constructor Details
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LcaoCartoon
public LcaoCartoon()
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Method Details
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initShape
public void initShape()- Overrides:
initShape
in classIsosurface
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setProperty
- Overrides:
setProperty
in classIsosurface
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setLcaoOn
private void setLcaoOn(boolean TF) -
setLcaoOn
private void setLcaoOn(int iAtom, boolean TF) -
deleteLcaoCartoon
private void deleteLcaoCartoon() -
deleteLcaoCartoon
private void deleteLcaoCartoon(int iAtom) -
createLcaoCartoon
private void createLcaoCartoon() -
createLcaoCartoon
private void createLcaoCartoon(int iAtom) -
getID
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getShapeState
- Overrides:
getShapeState
in classIsosurface
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merge
Description copied from class:MeshCollection
called by ParallelProcessor at completion- Overrides:
merge
in classMeshCollection
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