libStatGen Software 1
PedigreeDescription Member List

This is the complete list of members for PedigreeDescription, including all inherited members.

AddAffectionColumn(const char *affectionName) (defined in PedigreeDescription)PedigreeDescription
AddCovariateColumn(const char *covariateName) (defined in PedigreeDescription)PedigreeDescription
AddMarkerColumn(const char *markerName) (defined in PedigreeDescription)PedigreeDescription
AddSkippedColumn() (defined in PedigreeDescription)PedigreeDescription
AddStringColumn(const char *stringName) (defined in PedigreeDescription)PedigreeDescription
AddTraitColumn(const char *traitName) (defined in PedigreeDescription)PedigreeDescription
AddZygosityColumn() (defined in PedigreeDescription)PedigreeDescription
affectionCount (defined in PedigreeGlobals)PedigreeGlobalsstatic
affectionLookup (defined in PedigreeGlobals)PedigreeGlobalsstatic
affectionNames (defined in PedigreeGlobals)PedigreeGlobalsstatic
AlleleFrequenciesAvailable() (defined in PedigreeGlobals)PedigreeGlobalsstatic
chromosomeX (defined in PedigreeGlobals)PedigreeGlobalsstatic
columnCount (defined in PedigreeDescription)PedigreeDescription
columnHash (defined in PedigreeDescription)PedigreeDescription
columns (defined in PedigreeDescription)PedigreeDescription
ColumnSummary(String &string) (defined in PedigreeDescription)PedigreeDescription
CountTextColumns() (defined in PedigreeDescription)PedigreeDescription
covariateCount (defined in PedigreeGlobals)PedigreeGlobalsstatic
covariateLookup (defined in PedigreeGlobals)PedigreeGlobalsstatic
covariateNames (defined in PedigreeGlobals)PedigreeGlobalsstatic
filename (defined in PedigreeDescription)PedigreeDescription
FlagMissingMarkers(IntArray &missingMarkers) (defined in PedigreeGlobals)PedigreeGlobalsstatic
GetAffectionID(const char *name) (defined in PedigreeGlobals)PedigreeGlobalsstatic
GetCovariateID(const char *name) (defined in PedigreeGlobals)PedigreeGlobalsstatic
GetMarkerID(const char *name) (defined in PedigreeGlobals)PedigreeGlobalsstatic
GetMarkerInfo(String &name) (defined in PedigreeGlobals)PedigreeGlobalsstatic
GetMarkerInfo(int marker) (defined in PedigreeGlobals)PedigreeGlobalsstatic
GetOrderedMarkers(IntArray &markers) (defined in PedigreeGlobals)PedigreeGlobalsstatic
GetStringID(const char *name) (defined in PedigreeGlobals)PedigreeGlobalsstatic
GetTraitID(const char *name) (defined in PedigreeGlobals)PedigreeGlobalsstatic
GrowMarkerInfo() (defined in PedigreeGlobals)PedigreeGlobalsstatic
Load(IFILE &Input, bool warnIfLinkage=false) (defined in PedigreeDescription)PedigreeDescription
Load(const char *filename, bool warnIfLinkage=false) (defined in PedigreeDescription)PedigreeDescription
LoadAllele(int marker, String &label) (defined in PedigreeGlobals)PedigreeGlobalsstatic
LoadAllele(MarkerInfo *info, String &label) (defined in PedigreeGlobals)PedigreeGlobalsstatic
LoadAlleleFrequencies(const char *filename, bool required=false) (defined in PedigreeGlobals)PedigreeGlobalsstatic
LoadAlleleFrequencies(IFILE &file) (defined in PedigreeGlobals)PedigreeGlobalsstatic
LoadBasepairMap(const char *filename) (defined in PedigreeGlobals)PedigreeGlobalsstatic
LoadBasepairMap(IFILE &file) (defined in PedigreeGlobals)PedigreeGlobalsstatic
LoadLinkageDataFile(IFILE &input) (defined in PedigreeDescription)PedigreeDescription
LoadLinkageDataFile(const char *filename) (defined in PedigreeDescription)PedigreeDescription
LoadMap(IFILE &Input) (defined in PedigreeDescription)PedigreeDescription
LoadMap(const char *filename) (defined in PedigreeDescription)PedigreeDescription
LoadMarkerMap(const char *filename, bool filter=false) (defined in PedigreeGlobals)PedigreeGlobalsstatic
LoadMarkerMap(IFILE &file, bool filter=false) (defined in PedigreeGlobals)PedigreeGlobalsstatic
LoadMendelDataFile(IFILE &input) (defined in PedigreeDescription)PedigreeDescription
LoadMendelDataFile(const char *filename) (defined in PedigreeDescription)PedigreeDescription
LookupAffection(const char *name) (defined in PedigreeGlobals)PedigreeGlobalsinlinestatic
LookupCovariate(const char *name) (defined in PedigreeGlobals)PedigreeGlobalsinlinestatic
LookupMarker(const char *name) (defined in PedigreeGlobals)PedigreeGlobalsinlinestatic
LookupString(const char *name) (defined in PedigreeGlobals)PedigreeGlobalsinlinestatic
LookupTrait(const char *name) (defined in PedigreeGlobals)PedigreeGlobalsinlinestatic
markerCount (defined in PedigreeGlobals)PedigreeGlobalsstatic
markerInfo (defined in PedigreeGlobals)PedigreeGlobalsstatic
markerInfoByInteger (defined in PedigreeGlobals)PedigreeGlobalsstatic
markerInfoByName (defined in PedigreeGlobals)PedigreeGlobalsstatic
markerInfoCount (defined in PedigreeGlobals)PedigreeGlobalsstatic
markerInfoSize (defined in PedigreeGlobals)PedigreeGlobalsstatic
markerLookup (defined in PedigreeGlobals)PedigreeGlobalsstatic
markerNames (defined in PedigreeGlobals)PedigreeGlobalsstatic
MarkerPositionsAvailable() (defined in PedigreeGlobals)PedigreeGlobalsstatic
mendelFormat (defined in PedigreeDescription)PedigreeDescription
operator=(PedigreeDescription &rhs) (defined in PedigreeDescription)PedigreeDescription
PedigreeDescription() (defined in PedigreeDescription)PedigreeDescription
PedigreeGlobals() (defined in PedigreeGlobals)PedigreeGlobalsinline
sexSpecificMap (defined in PedigreeGlobals)PedigreeGlobalsstatic
SortMarkersInMapOrder(IntArray &markers, int chromosome=-1) (defined in PedigreeGlobals)PedigreeGlobalsstatic
stringCount (defined in PedigreeGlobals)PedigreeGlobalsstatic
stringLookup (defined in PedigreeGlobals)PedigreeGlobalsstatic
stringNames (defined in PedigreeGlobals)PedigreeGlobalsstatic
traitCount (defined in PedigreeGlobals)PedigreeGlobalsstatic
traitLookup (defined in PedigreeGlobals)PedigreeGlobalsstatic
traitNames (defined in PedigreeGlobals)PedigreeGlobalsstatic
VerifySexSpecificOrder() (defined in PedigreeGlobals)PedigreeGlobalsstatic
WriteFreqFile(const char *filename, bool old_format=false) (defined in PedigreeGlobals)PedigreeGlobalsstatic
WriteFreqFile(FILE *file, bool old_format=false) (defined in PedigreeGlobals)PedigreeGlobalsstatic
WriteMapFile(const char *filename) (defined in PedigreeGlobals)PedigreeGlobalsstatic
WriteMapFile(FILE *file) (defined in PedigreeGlobals)PedigreeGlobalsstatic
~PedigreeDescription() (defined in PedigreeDescription)PedigreeDescription
~PedigreeGlobals() (defined in PedigreeGlobals)PedigreeGlobals