libStatGen Software 1
SamFlag Member List

This is the complete list of members for SamFlag, including all inherited members.

DUPLICATE (defined in SamFlag)SamFlagstatic
FAILED_QUALITY (defined in SamFlag)SamFlagstatic
FIRST_READ (defined in SamFlag)SamFlagstatic
FRAGMENT_INFO (defined in SamFlag)SamFlagstatic
FRAGMENT_SHIFT (defined in SamFlag)SamFlagstatic
getFragmentType(uint16_t flag) (defined in SamFlag)SamFlaginlinestatic
isDuplicate(uint16_t flag) (defined in SamFlag)SamFlaginlinestatic
isFirstFragment(uint16_t flag)SamFlaginlinestatic
isLastFragment(uint16_t flag)SamFlaginlinestatic
isMapped(uint16_t flag) (defined in SamFlag)SamFlaginlinestatic
isMateMapped(uint16_t flag) (defined in SamFlag)SamFlaginlinestatic
isMateReverse(uint16_t flag) (defined in SamFlag)SamFlaginlinestatic
isMidFragment(uint16_t flag)SamFlaginlinestatic
isPaired(uint16_t flag) (defined in SamFlag)SamFlaginlinestatic
isProperPair(uint16_t flag) (defined in SamFlag)SamFlaginlinestatic
isQCFailure(uint16_t flag) (defined in SamFlag)SamFlaginlinestatic
isReverse(uint16_t flag) (defined in SamFlag)SamFlaginlinestatic
isSecondary(uint16_t flag) (defined in SamFlag)SamFlaginlinestatic
isUnknownFragment(uint16_t flag)SamFlaginlinestatic
MATE_REVERSED (defined in SamFlag)SamFlagstatic
MATE_UNMAPPED (defined in SamFlag)SamFlagstatic
PAIRED (defined in SamFlag)SamFlagstatic
PROPER_PAIR (defined in SamFlag)SamFlagstatic
REVERSE (defined in SamFlag)SamFlagstatic
SECOND_READ (defined in SamFlag)SamFlagstatic
SECONDARY_ALIGNMENT (defined in SamFlag)SamFlagstatic
setDuplicate(uint16_t &flag)SamFlaginlinestatic
setNotDuplicate(uint16_t &flag)SamFlaginlinestatic
setUnmapped(uint16_t &flag)SamFlaginlinestatic
SUPPLEMENTARY_ALIGNMENT (defined in SamFlag)SamFlagstatic
UNMAPPED (defined in SamFlag)SamFlagstatic